PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01529g04008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 394aa    MW: 45583.3 Da    PI: 5.3924
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01529g04008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind99.33.6e-31801722103
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               F+ k+ye+l d +++ lisw+ +g+sf+++d ++fa +vLp++F+h+n++SFv QLn YgF+k++ ++          eF+h+ F
  Niben101Scf01529g04008.1  80 FVLKIYEMLADIQFNPLISWNGKGTSFIIHDCHKFAAEVLPRFFRHNNISSFVCQLNCYGFRKISWDK---------YEFQHECF 155
                               9*****************************************************************99.........78****** PP

                               XXXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkkse 103
                               ++gk + l++ikrk s+
  Niben101Scf01529g04008.1 156 QRGKGQWLKNIKRKGSK 172
                               *************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.1E-3976169IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.2E-3177169IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.76E-2977169IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.2E-1380103IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.5E-2780169IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.2E-13118130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.2E-13131143IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MKSDKGKGKM TNNIGELLEE WYEDEGLEDV QIDISMLEND DYQGDNTNNQ RIHGSVTGAP  60
QHRLGVRNSR RNLQKRACPF VLKIYEMLAD IQFNPLISWN GKGTSFIIHD CHKFAAEVLP  120
RFFRHNNISS FVCQLNCYGF RKISWDKYEF QHECFQRGKG QWLKNIKRKG SKKSDMNKQP  180
QEQGIVETVA VTMEKEIEEI REEQNAMRKE IIMLHQQLDI LEKELEDNTK QARNHVSSKK  240
AQILKYLLGP LFECIGEVGG SEVSRGLEEE EKQGDEIEDG VENRGEKRKK QVEEELQGKH  300
EGSKDVSDFR SDSDLRKMLM DEMDMNNLAQ EQPDNFLEPE EQAQGPSFWI DYVEKLDHKA  360
ILSGVGPAVS HSQENHTVKL FHVCSLLNYN FIKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-238016929129Heat shock factor protein 1
5d5v_B1e-238016929129Heat shock factor protein 1
5d5v_D1e-238016929129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009790212.10.0PREDICTED: heat stress transcription factor A-7b-like
TrEMBLM1DNE41e-148M1DNE4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000917901e-147(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA140991213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.12e-28heat shock transcription factor A3